Category Archives: science

The Importance of Knowing How

Interesting article by AC Grayling in the “Commentary” column of last week’s New Scientist under the above title. The “Commentary” column, written on alternate weeks by Grayling and Lawrence Krauss, always provides food for thought. This week’s column was, in my view, especially important. As usual because New Scientist don’t make their articles available on-line to non-subscribers here is an edited version.

Philosophers investigating the nature of knowledge and the best methods of acquiring it have always distinguished between knowledge of facts and knowledge of techniques. Knowing that Everest is the highest mountain, and knowing how to measure the height of mountains, are respective examples of the two kinds of knowing. The interesting question is, which is more important?

[…] an education system worthy of the name should equip people with both kinds. But it is still worthwhile to ask which is more important, for the equally obvious reason that no head can first cram in, and then later recall at need, everything that passes as currently accepted fact. What’s more, the number of currently accepted facts is tiny in comparison with what we know we still do not know, which is in turn probably a tiny fraction of what might be knowable.

So although everyone coming out of an educational system should at least know [basic facts] they are much more in need of knowing how to find things out, how to evaluate the information they discover, and how to apply it fruitfully. These are skills; they consist in knowledge of how to become knowledgeable.

[…] information is not knowledge […]

[…] it is no bad thing that the internet is such a democratic domain, where opinions and claims can enjoy an unfettered airing […] This increases the necessity for internet users to be good at discriminating between high and low-quality information, and between reliable and unreliable sources.

We teach research skills in higher education differently for the sciences and humanities […] In the sciences, laboratory technique and experimental design and methodology are fundamental; in the humanities, the use of libraries and archives and the interpretation of texts are in the basic tool kit […]

Knowing how to evaluate information, therefore, is arguably the most important kind of knowledge that education has to teach […] only the International Baccalaureate makes critical thinking […] a standard requirement, and in this as in so many ways it leads the field […] I wonder whether the need for critical thinking lessons is more urgent in the humanities than the sciences because the latter, by their nature, already have it built in. The science lab at school with its whiffs, sparks and bangs is a theatre of evaluation; the idea of testing and proving is the natural order there […]

When we talk of scientific literacy, one thing we should mean is acquisition of just this mindset; without it, too much rubbish gets through.

It’s no wonder that people don’t think is it!?

Sputnik Virus, A Viral Parasite

The following is from ProMED, an officially run mailing list for those interested in emerging infectious diseases. I’m posting it here because it is an interesting and unexpected piece of science — and because it arrived as an email I can’t add it to the “shared” list on the right.

A ProMED-mail post <http://www.promedmail.org>
ProMED-mail is a program of the International Society for Infectious Diseases <http://www.isid.org>

Date: Wed 6 Aug 2008
Source: The Scientist, NewsBlog [edited] <>

A virus’s virus
Researchers have discovered the 1st virus to infect another virus, according to a study appearing tomorrow in Nature. The new virus was found living inside a new strain of the viral giant, mimivirus. “This is one parasite living on another parasite, which is really fascinating,” Michael Rossman, microbiologist at Purdue University, who was not involved in the study, told The Scientist.

Didier Raoult and colleagues at the Universitee de la Mediterranee in Marseilles, France, discovered mimivirus in 2003 from a water-cooling tower in the UK [see ProMED-mail reference below]. It primarily infects amoeba, although antibodies have been found to the virus in some human pneumonia cases. It measures in diameter about 400 nanometers (nm), while medium-sized viruses such as adenovirus and human immunodeficiency virus (HIV) measure closer to 100-200 nm.

In this study, Raoult’s team found a new strain of mimivirus in water from a cooling tower in Paris. This new strain was even larger than [the UK] mimivirus, so the researchers named it mamavirus. To their surprise, while examining the new strain by electron microscopy they saw a smaller virus attached to mamavirus. This small virus comprises only 20 genes (mimivirus has more than 900 protein-coding genes) and the researchers named it Sputnik.

The team quickly set to work to see what effect Sputnik was having on the mamavirus. They found that Sputnik infects the replication machinery in mamavirus and causes it to produce deformed viral structures and abnormal capsids, where viral genetic information is stored. It had a similar effect on mimivirus. Because Sputnik’s behavior so closely resembles what bacteriophage do to bacteria, the researchers called the new type of virus a virophage, and suspect it may represent a new virus family.

The researchers found that Sputnik’s genes shared homology with genes from all 3 domains of life: archaea, bacteria, and eukarya. Some of the genes were homologous to novel sequences that scientists previously detected in a metagenomic study of ocean water. This supports the idea that Sputnik is part of a larger family of viruses, Bernard La Scola, researcher at the Universite de la Mediterranee (University of the Mediterranean) and 1st author on the paper, told The Scientist.

The size of a virus may dictate whether it can be infected by smaller viruses such as Sputnik, he added. For this reason, viruses that affect humans — like HIV and influenza — are likely too small to be infected by Sputnik-like viruses, said Rossman.

La Scola added he is sure that there are other giant viruses yet to be identified in the world, but they won’t necessarily be infected by smaller viruses. “We need to be lucky to find another Sputnik.”

[Byline: Andrea Gawrylewski]

Communicated by: ProMED-mail <promed@promedmail.org>

Zen Mischievous Moments #142

Connioseurs of 1970s UK police soap operas will remember the refrain “Let’s be ’avin’ you” when an arrest was about to be made. Our attention has been drawn to an example not of nominative determinism, but of locational determinism – the existence of a police facility on Letsby Avenue in the Yorkshire town of Sheffield (it’s right next to Sheffiled City Ariport). Sadly there is as yet no news of an “Onyer Way” or “Evenin Hall” in the vicinity.

[HT Feedback @ New Scientist]

Getting to Know You Meme


Getting to Know You Meme, originally uploaded by kcm76.

1. A perfect weekend watching Tom & Jerry on tv and laughing…, 2. Amur Leopard, 3. A TRIBUTE TO A DEAR FRIEND. (KILKENNY, IRELAND), 4. Untitled, 5. ₪ Rhizomatic in-between typewriter ₪, 6. “Timemachines”, 7. 14th August 2007 / Day 226, 8. The cake i Made for my mother’s birthday, 9. Embracing the sun … {}, 10. day 151 Caught with crabs in my merkin! , 11. Walking in the rain 1_2499, 12. Smiles of Tibet in Exile

The concept:
a. Type your answer to each of the questions below into Flickr Search.
b. Using only the first page, pick an image.
c. Copy and paste the html into your blog or Flickr stream (the easiest way is to copy the URLs and then head over to the fd’s flickr toys link above and use the mosaic maker).

The Questions & Answers:
1. What makes you laugh? Cats
2. What makes you cry? Animal suffering
3. Who is the one person you trust the most in the world? My Mother
4. Who broke your heart? Jill (no, not you Mistress Weekes; long before that!)
5. Where was your first kiss? I really don’t remember
6. What body part do you love most (your body)? My mind
7. What body part do you love least (your body)? My fat
8. What candy fits your personality? Coffee creme chocolate
9. What color would you paint your room if you could pick any color? Magnolia
10. A word that makes you laugh? Merkin
11. What emotion do you express most often? Depression
12. Who inspires you? The Dalai Lama

Created with fd’s Flickr Toys. for the Flickr My Meme group.

Zen Mischievous Moments #141

The “Feedback” column this week’s New Scientist contains this item …

Thanks to Terence Dunmore for alerting us to a report in the 11 June issue of Professional Engineering about the UK’s new Waste Electrical and Electronic Equipment Regulations (WEEE regulations). It warns readers: “If you are a producer of WEEE, you must make sure it is disposed of in an environmentally sound manner, including the treatment, reuse, recovery and recycling of components where appropriate.”
Dunmore is puzzled. “Isn’t the local sewage department already doing just that?” he asks.

Quote: Decency

Each person has inside a basic decency and goodness. If he listens to it and acts on it, he is giving a great deal of what it is the world needs most. It is not complicated but it takes courage. It takes courage for a person to listen to his own goodness and act on it.

[Pablo Casals]

Zen Mischievous Moments #140

The following is from the Feedback column of the current issue of New Scientist

The $500 cable

EAGLE-EYED readers have pointed us to an intriguing offer. The US website for Japanese electronics giant Denon is inviting consumers to pay $499 for what appears to be a 1.5-metre network cable of the type that usually costs only a few dollars. So what’s so special about Denon’s AK-DL1 patch cord?

According to Denon’s website it has “woven jacketing to reduce vibration” and the cable structure is “designed to thoroughly eliminate adverse effects from vibration”. In addition, “signal directional markings are provided for optimum signal transfer”. Plus, the AK-DL1 is made from “high purity copper” which “will bring out all the nuances in digital audio reproduction”.

As puzzled as our readers, we emailed Denon via the website to ask for an explanation of what causes vibration in a network cable, what the adverse effects are, why signal directional markings optimise signal transfer, and how high-purity copper wire brings out the nuances of a digital signal.

Within minutes an email winged back that failed to answer any of our questions. Although the AK-DL1 may look like an ordinary ethernet cable, it told us, “the similarities end there… the cable is designed in such a way that vibration is all but eliminated so that sound being passed is as pure as possible… That being said, this cable is not going to provide you with much of a difference unless used with top of the line equipment across the board.”

Denon helpfully gives some examples of such equipment, including a DVD player that costs $3800 and an amplifier costing $7000. So all we have to do to check Denon’s claims for the $500 cable is pay $10,800 for something to plug it into. Isn’t that nice?

Shortly after this exchange with Denon, we came across an item on the BoingBoing gadget site at www.cablereviews.notlong.com. It quotes “brilliant” reviews of the Denon cable from what BoingBoing describes as “perhaps the best Amazon [reader] reviews page of all time”. Our favourite is this: “A caution to people buying these: if you do not follow the ‘directional markings’ on the cables, your music will play backwards.”

Seven Reasons Why People Hate Reason

The current issue of New Scientist has a 13-page series of items on “Reason” with the title “Seven Reasons Why People Hate Reason” from authors as diverse as the Archbishop of Canterbury, mathematician Roger Penrose and linguist Noam Chomsky. Taken as a whole – indeed even taken individually – the short articles are philosphically incredibly deep and quite difficult. They bear reading and I think probably re-reading. As New Scientist doesn’t make its full material; available online except to subscribers, what follows is a cherry-picked selection of what are (for me) soem of the highlights and insights. I offer them without commentary, and without the attribution to their specific authors, as food for thought.

From the 16th century, reason came to be seen as opposed to tradition and authority. Faced with the expectation of believing something just because a particular sort of person said so, the reasonable person was now the one who asked: “What are the arguments for this?”

This focus on rationality doesn’t speak to how people usually understand their lives and so they reject it for homeopathy, diet pills and […] stories about planes on Mars. People understand the world in stories, not dry rationality.

Do we know for certain that 2 plus 2 equals 4? Of course we don’t. Maybe every time everybody in the whole world has ever done that calculation and reasoned it through, they’ve made a mistake. Maybe it isn’t 4, it’s really 5. There is a very, very small chance that this has happened.

[There are] people saying we shouldn’t turn on the Large Hadron Collider experiment because a small probability exists that it might create black holes that would annihilate Earth. Sensible scientists say that this is ridiculous, there’s no chance. On the other hand, there’s a small chance that accepted theory is wrong, so there is a chance!

The central question here is about trust. What do you put your faith in? The kind of faith that Nehru expresses in science is absolute. It is not at all the qualified, provisional acceptance that might suit actual scientific findings. It claims to answer not just factual questions but every kind of social and moral dilemma. It offers general salvation. This sort of unconditional, general reliance on a single authority is never sensible, whatever god it may invoke. No system provides an infallible oracle; different problems need different ways of thinking.

Reason is “dangerous” because it leads you to question faith, not just faith that the world was created 6000 years ago but faith in the secular religions that lead to state power.

[…] governments and big corporations have hijacked the language and methods of reason and science in their PR and advertising to subvert the ability of people to judge for themselves – an end directly opposed to the Enlightenment values we supposedly hold dear.

[…] the concern that science and reason are increasingly seen as providing not just scientific, technical and military fixes, but answers to everything that matters in the world. This alienates people […] because it leaves no room for morality, art, imperfection and all of the things that make us human. Is it really surprising that so many turn to pseudoscience?

[…] even when we think we are being reasonable, we aren’t. Our decisions are based on gut instinct, then justified post hoc – and they are made better when we don’t consciously think about them. Researchers are also starting to realise that individual judgements they had long categorised as emotional and irrational may actually be beneficial when seen in the context of a group.

Measles Endemic in UK

Apparently Measles is now endemic in the UK. Well now there’s a surprise — I thought it always had been! But according to an item the other day on ProMED Mail (the mailing list of the International Society for Infectious Diseases) which is interested mostly in emerging diseases, Measles had become a rarity but is once again endemic. To quote from the item …

Measles once again endemic in the United Kingdom

A total of 14 years after the local transmission of measles was halted in the United Kingdom (UK),the disease has once again become endemic, according to the Health Protection Agency (HPA), the public health body of England and Wales. In an update on measles cases in its weekly bulletin last week, the agency stated that, as a result of almost a decade of low mumps-measles-rubella(MMR) vaccination coverage across the UK, ‘the number of children susceptible to measles is now sufficient to support the continuous spread of measles’.

In an earlier update, the HPA reported that all recent indigenously-acquired cases with a genotype in England and Wales had been found to have the same D4 sequence …

In May [2008], a 17-year-old with underlying congenital immunodeficiency died of acute measles infection, the first such fatality in the UK since 2006 … The total number of confirmed measles cases in England and Wales so far this year [2008] is 461. In Scotland, there have been 68 cases of measles reported in 2008, of which 51 have been laboratory-confirmed. All of the cases in Scotland were either not immunised or of unknown immunisation status. Only 2 of the cases were imported from abroad …

The HPA has recommended that health services exploit ‘all possible opportunities’ to offer MMR vaccine to children who have not received 2 doses … Europe is facing a measles epidemic, with large ongoing outbreaks for instance in Switzerland, Austria and Italy.

Why am I not surprised? Moreover I don’t understand this fuss; we’ve always had Measles. Yes, I know it can be nasty, but so can ‘flu. Why do we have this fetish that we must always rid ourselves so permanently of all diseases. Are we not beginning to get evidence that the population as a whole is healthier for being exposed to all these things?

What I Done on My Holidays

At the beginning of June Noreen and I had two weeks holiday (well time off work anyway). For a variety of reasons, not least that we couldn’t get anyone to feed the cats, not even our local cattery, we didn’t go away. As always we intended to have lots of days out but due to basic knackeration and idleness we failed. So here is what I did done on my holidays …

  • Took lots of photographs of the garden and especially the roses
  • Supervised the gardener reconstructing the compost heaps
  • Got a boot-load of old stuff (dead printers, garden shredder) taken to the tip
  • Proofread Anthony Powell Society quarterly Newsletter and sent it to printer
  • Paid loads of bills
  • Turned out the toot from our wardrobes and threw out a load of old shoes, underwear, etc.
  • Reviewed the draft new Anthony Powell Society website (still under development at the time of writing)
  • Got a haircut
  • Tidied up my PC hard disk
  • Photoshopped lots of photos and posted them to Flickr
  • Caught up on the pile of magazines to read by the bed
  • Had some extra sleep
  • Cooked lamb curry, vegetable curry and trout & pasta
  • Decided not to buy a new bike (‘cos I know I’ll end up not using it, like I didn’t use the last one)
  • Attended a charity trustees meeting, and unexpectedly had to chair it
  • Went to London Zoo
  • Went to the garden centre and bought loads of plants (some acers, a rose, a passion flower, lots of small things) and some terracotta pots for the patio
  • Had a major tidy-up and repotted lots of plants on the patio
  • Stayed up late but still got up fairly early (at least on some days)
  • Had several siestas
  • Went to Kew Gardens
  • Spent lots of time pottering in the garden
  • Got slightly sunburnt
  • Wrote several weblog posts
  • Had sex, several times
  • Totally buggered my sleep pattern and failed to get up early on the days I wanted to (which is why we didn’t have as many away-days as planned)
  • Processed a raft of literary society membership renewals and other admin; three afternoons worth!
  • Tried to agree what we should do for an autumn holiday – and failed!

Such is the stuff of doing nothing.