Category Archives: science

Bad Science Rising

Some while ago I read Bad Science by Ben Goldacre. As his website says:

Ben is an award-winning writer, broadcaster, and medical doctor who specialises in unpicking dodgy scientific claims made by scaremongering journalists, dodgy government reports, evil pharmaceutical corporations, PR companies and quacks. He has written the weekly “Bad Science” column in the Guardian since 2003.

Bad Science“, the Guardian column and blog, seeks to expose the misrepresentation of scientific and medical reporting in the media.

Bad Science, the book, looks in greater depth at the ways in which the aforementioned journalists, pharmaceutical companies, PR people, quacks and, yes, even government reports distort, misrepresent and lie about the science behind just about everything in order to have us believe what they want us to believe.

In reading the book I culled a few good quotes (page references to the 2008 paperback edition) for you …

——

As the perfect example, there are huge numbers of creams (and other beauty treatments) claiming to deliver oxygen directly to your skin. Many of the creams contain peroxide, which, if you really want to persuade yourself of its efficacy, has a chemical formula of H2O2, and could fancifully be conceived of as water ‘with some extra oxygen’, although chemical formulae don’t really work that way – after all, a pile of rust is an iron bridge ‘with some extra oxygen’, and you wouldn’t imagine it would oxygenate your skin. [Page 25]

——

Like most things in the story the natural sciences can tell about the world, it’s all so beautiful, so gracefully simple, yet so rewardingly complex, so neatly connected – not to mention true – that I can’t even begin to imagine why anyone would ever want to believe some New Age ‘alternative’ nonsense instead. [Page 117]

——

We should also remember that bizarre English ritual whereby GCSE results get better every year, yet anyone who suggests that the exams are getting easier is criticised for undermining the achievement of the successful candidates. In fact, taking the long view, this easing is obvious: there are forty-year-old O-level papers which are harder than the current A-level syllabus; and there are present-day university finals papers in maths that are easier than old A-level papers. [Page 140]

——

SSRI antidepressant drugs cause sexual side-effects fairly commonly, including anorgasmia. We should be clear (and I’m trying to phrase this as neutrally as possible): I really enjoy the sensation of orgasm. It’s important to me, and everything I experience in the world tells me that this sensation is important to other people too […] There are evolutionary psychologists who would try to persuade you that the entirety of human culture and language is driven, in large part, by the pursuit of the sensation of orgasm. Losing it seems like an important side-effect to ask about.

And yet, various studies have shown that the reported prevalence of anorgasmia in patients taking SSRI drugs varies between 2 per cent and 73 per cent, depending primarily on how you ask: a casual, open-ended question about side-effects, for example, or a careful and detailed enquiry. One 3,000-subject review on SSRIs simply did not list any sexual side-effects on its twenty-three-item side-effect table. Twenty-three other things were more important, according to the researchers, than losing the sensation of orgasm. I have read them. They are not. [Pages 190-191]

——

Research conducted at Cardiff University in 2007 showed that 80 per cent of all broadsheet news stories were ‘wholly, mainly or partially constructed from second-hand material, provided by news agencies and by the public relations industry’. [Page 211]

——

Science coverage now tends to come from the world of medicine, and the stories are of what will kill you, or save you. Perhaps it is narcissism, or fear, but the science of health is important to people, and at the very time when we need it the most, our ability to think around the issue is being energetically distorted by the media, corporate lobbies and, frankly, cranks.

Without anybody noticing, bullshit has become an extremely important public health issue, and for reasons that go far beyond the obvious hysteria around immediate harms: the odd measles tragedy, or a homoeopath’s unnecessary malaria case. Doctors today are keen – as it said in our medical school notes – to work ‘collaboratively with the patient towards an optimum health outcome’. They discuss evidence with their patients, so that they can make their own decisions about treatments.

[…] working in the NHS you meet patients from every conceivable walk of life, in huge numbers, discussing some of the most important issues in their lives. This has consistently taught me one thing: people aren’t stupid. Anybody can understand anything, as long as it is clearly explained. [Pages 316-7]

——

The book certainly makes you think about the truth of just about everything we’re told. It is definitely recommended reading, it isn’t hard even for non-scientific technophobes and is most definitely clearly explained.

Quotes of the Week

A better selection of quotes this week, which reflects a more varied weeks reading.

Invisible Pink Unicorns are beings of great spiritual power. We know this because they are capable of being invisible and pink at the same time. Like all religions, the Faith of the Invisible Pink Unicorns is based upon both logic and faith. We have faith that they are pink; we logically know that they are invisible because we can’t see them.
[Steve Eley]

When you run into something interesting, drop everything else and study it.
[Psychologist BF Skinner]

We all are born mad. Some remain so.
[Samuel Beckett]

Physicists. Just because you’re not smart enough to know what the fuck they’re talking about doesn’t mean God exists.
[]

I contend that we are both atheists. I just believe in one fewer god than you do. When you understand why you dismiss all the other possible gods, you will understand why I dismiss yours.
[Stephen Roberts]

Children are naïve – they trust everyone. School is bad enough, but, if you put a child anywhere in the vicinity of a church, you’re asking for trouble.
[Frank Zappa]

Bad facts make bad law, and people who write bad laws are in my opinion more dangerous than songwriters who celebrate sexuality.
[Frank Zappa; Statement to the Senate Hearing on “Porn Rock”; 1985]

I do not know what I may appear to the world; but to myself I seem to have been only like a boy, playing on the sea shore, and diverting myself in now and then finding a smoother pebble or a prettier shell than the ordinary, whilst the great ocean of truth lay all undiscovered before me.
[Isaac Newton]

You can’t always write a chord ugly enough to say what you want to say, so sometimes you have to rely on a giraffe filled with whipped cream.
[Frank Zappa]

Just as long as that giraffe is made of choux pastry and dipped in chocolate! Might be best if it doesn’t mate with a pink unicorn too. 🙂

Prime or Not?

I came across this on the intertubes earlier. It may amuse those of a more scientific bent …

Several people are asked to prove that all odd integers greater than 2 are prime.

  • Post-graduate mathematician: 3 is prime, 5 is prime, 7 is prime, 9 is not prime. Ha! A counterexample.
  • Undergraduate mathematician: 3 is prime, 5 is prime, 7 is prime… so by induction, all subsequent odd integers are prime.
  • Statistician: Let’s verify this on several randomly selected odd numbers, say, 23, 47, and 83.
  • Computer scientist: 3 is prime, 5 is prime, 7 is prime, segmentation fault?
  • Computer programmer: 3 is prime, 3 is prime, 3 is prime, 3 is prime…
  • Physicist: 3 is prime, 5 is prime, 7 is prime, 9 is an experimental error, 11 is prime…
  • Mechanical engineer: 3 is prime, 5 is prime, 7 is prime, 9 is approximately prime, 11 is prime…
  • Civil engineer: 3 is prime, 5 is prime, 7 is prime, 9 is prime…
  • Biologist: 3 is prime, 5 is prime, 7 is prime, 9 is… still awaiting results…
  • Psychologist: 3 is prime, 5 is prime, 7 is prime, 9 is prime but suppresses it, 11 is prime…
  • Economist: 2 is prime, 4 is prime, 6 is prime…
  • Politician: Shouldn’t the goal really be to create a greater society where all numbers are prime?
  • Sarah Palin: What’s a prime?


I especially like the Physicist and Mechanical Engineer ones.

[12/52] Delirium

[12/52] Delirium

Week 12 entry for 52 weeks challenge.

This was a grab shot from the car while waiting at traffic lights at Greenford Broadway last weekend. I was attracted by the wonderfully colourful primulas (they must be Primula locus-concilium they are such a favourite of local authority Parks & Gardens Departments) in the Spring sunshine.

This wobbly processed form is about how I saw the picture at the time as I was just starting a high fever from some nasty flu-cum-bronchitis-bug-thingy that seems to be doing the rounds here at present. This bug is nasty. Noreen is now four weeks into it and is still not 100%. I thought I’d got away with it (just had a bit of malaise for a few days when Noreen was first down with it). But no, it mugged me and I have spent a large part of the last week snuggled under the duvet trying to get rid of a fever and graveyard cough and feeling like … well let’s not go there. I now feel bodily coldy; still totally depleted of everything both mental and physical; still with a cough, although that is going slowly; but today almost no voice.

But then I have just put away a hearty salad of pulled lamb, lamb’s lettuce, tomato and avocado with a couple of large glasses of white Burgundy (first alcohol in over a week!) which does somewhat restore the soul if not the body.

Quotes of the Week

Slightly thin pickings this week as I’ve been flattened by some nasty flu-cum-bronchitis-bug-thingy all week which has precluded almost everything except lying in bed being date expired.

In the past, when marriage was a more pragmatic institution, love was optional. Respect was essential. Men and women found emotional connection elsewhere, primarily in same-sex relationships. Men bonded over work and recreation; women connected through child rearing and borrowing sugar.
Esther Perel; Mating in Captivity: Sex, Lies and Domestic Bliss]

Reality must take precedence over public relations, for nature cannot be fooled.
[Richard Feynman]

We still live in a world where progress only happens with funerals.
[Violet Blue]

Every law is an infraction of liberty.
[Jeremy Bentham]

I wonder if other dogs think poodles are members of a weird religious cult.
[Rita Rudner]

A Refreshing Perspective

This BBC analysis article by Prof. David Spiegelhalter, Professor of the Public Understanding of Risk at Cambridge University puts the radiation risks from the Japanese nuclear situation into perspective. I commend it to everyone as a balanced piece of scientific reporting. Let’s not lose our heads just because those around us are running about being unnecessarily demented. Let’s keep a sense of perspective. And please let’s put an end to all the hysteria!

[Hat-tip Brad Warner at Hardcore Zen]

Quotes of the Week

A good selection of amusements amongst this week’s quotes …

The future is already here – it’s just not very evenly distributed.
[William Gibson]

I would rather be exposed to the inconveniences attending too much liberty than to those attending too small a degree of it.
[Thomas Jefferson]

Society places a great deal of importance upon “being concerned” about this, that or the other terrible thing going on somewhere in the world. I agree that a bit of this concern is useful in helping alleviate suffering in those places. But it strikes me that the vast majority of what we call “being concerned” involves getting into our own heads, turning over the information, imagining whatever we want to imagine, working up our emotions, wallowing in our feelings like a pig in mud. For some reason I’ve never been able to comprehend very clearly this makes us look good socially, like we’re doing the right thing. But I’m unable to see how watching endless reports […] about a disaster really helps anything.
[Brad Warner at http://hardcorezen.blogspot.com/]

You can keep a dog; but it is the cat who keeps people, because cats find humans useful domestic animals.
[George Mikes, How to be Decadent]

Cats are smarter than dogs. You can’t get eight cats to pull a sled through snow.
[Jeff Valdez]

Life is fragile. You and I are living lives just as precarious as those people who got swept away into the ocean last week. We just fool ourselves into believing otherwise. But that’s not a reason to live in fear. Life is a terminal disease.
[Brad Warner on the Sendai Earthquake at http://hardcorezen.blogspot.com/2011/03/japan-earthquake.html]

Every mountain; every rock on this planet; every living thing; every piece of you and me was forged in the furnaces of space.
[Prof. Brian Cox; Wonders of the Universe; BBC2 TV, 13 March 2011]

I hear the argument, and it is an ingenious argument only a lawyer of his brilliance could make …
[David Cameron replying in House of Commons to Sir Malcolm Rifkind]

Never play with a dead cat and above all never make friends with a monkey.
[Osbert Sitwell, quoting his father in Tales My Father Taught Me. Thanks to Katyboo for this one.]

The natural world is a living erotic museum filled with variations in male genitalia, illustrating how natural selection has paid nearly as much attention to the male member as Catholic priests have.
[http://zinjanthropus.wordpress.com/]

To you , I’m an atheist; to God, I’m the loyal opposition.
[Woody Allen]

“Are there circumstances in which the government might …?”
“Well there could be circumstances. To answer your question in any other way would preclude all possibilities.”

[William Hague, UK Foreign Secretary, answering a question from the Parliamentary Foreign Affairs Committee; 16/03/2011]

Japan Nuclear Update

Referring to my Sunday post about the events in Japan, a friend in the US has asked me “Are you still this non-apocalyptic after the latest explosion?”. And given what has been reported about the situation at the Fukushima reactors since Sunday I feel I should update my opinions.

So where are we? Well it’s really difficult to tell. There have now been three explosions, and a further significant release of radioactivity. Albeit the radioactivity appears to be relatively short-lived nucleotides. But we now really don’t know enough about what is actually happening in Fukushima. In fact nobody knows exactly what’s happening apart from the engineers on the ground. All we are getting is the third- or fourth-hand account which the Japanese government are putting out and which is then being spun every which way by the media.

Do I trust what we’re being told? Again it is hard to say. All nuclear authorities (and governments) have a poor track record of owning up to bad news; the Japanese are no better or worse that anyone else. That means I am very skeptical about what’s being admitted to. What is being said may be true, but it may not be the whole truth and nothing but the truth. But as I say, we really don’t know, and cannot know.

However as I understand it, and despite the latest reports, the worst case scenario still cannot be as bad as Chernobyl due to the design of the reactors. Of course that doesn’t mean it couldn’t still be really very nasty. Remember that these nuclear plants have three or four levels of containment between the fuel rods and the open air. A full meltdown and fire, as happened at Chernobyl, would require all the levels of containment to be breached, all the cooling to have failed and at least some of the control rods to not be in place between the fuel rods. Given that we are told the reactors shutdown correctly, all the control rods should be inserted amongst the fuel rods which, if I have understood correctly, makes the worst case Chernobyl scenario highly unlikely.

Let’s also be clear. This situation has not obviously been caused by the earthquake – the facility appears to have withstood a quake some 5 times more severe than its design limit. (I have read that the design limit was to withstand a quake of magnitude 8.2, so this 9.0 quake is way above that design threshold; remember the Richter Scale is logarithmic.) It was the subsequent tsunami taking out the nuclear plant’s backup power generators which triggered the problems, and that clearly was not designed for. One has to question the wisdom of building nuclear facilities so close to such an active geological fault, especially one know to trigger tsunamis.

It’s undoubtedly a nasty situation, and extremely scary for the local population. But as far as one can tell the Japanese authorities are probably handling this as well as anyone could. We just have to hope that the authorities and the engineers are doing enough.

But we just don’t know (and may never know) enough about what’s really happening inside those reactors – no-one does except the engineers on site.

if you want to know more technical details there are good posts here, here and here, and regular technical updates here.

Japan

No, I’m not going to write in any detail about, what I suspect we all agree are, the horrors of the recent events in Japan; I’m not going to indulge in ghoulish voyeurism. However I find these events fascinating from a forensic viewpoint: what happened; how and why did it happen; how did it unfold. So I will content myself to comment on one or two things which have stuck me, as a scientist, over the last few days.

First of all the size of the quake. Initially assessed at Richter 8.9 it has now been upgraded to 9.0. This is normal as further seismic data becomes available. According to Wikipedia this makes the Sendai quake equal fourth largest in the last 150 years. This should not be surprising given the geology of the area.

There were some fore-shocks; but that is only known with hindsight. This brings home to me just how impossible it is for even the best experts to predict earthquakes. A lot of progress has been made in recent years on predicting volcanic eruptions, if only in the short term. But earthquakes are a totally different problem. Predicting when a geological fault is going to move is next to impossible. Japan has regular (almost daily) relatively small earthquakes because of where it sits on the fault lines. The scientists had predicted a big quake “sometime in the next 30 years”, which is about as precise as earthquake prediction appears possible at present. Is the Sendai Earthquake this big event? Well who knows. It isn’t impossible that a larger quake might happen, although my guess is that it is now much less likely.

Earthquakes impossible to predict with accuracy; so are tsunamis. As I understand it whether a quake generates a tsunami depends on many factors: the way the fault moves, the size of the movement, the seabed topography. The area around Japan is at high risk of tsunamis because of the type of faults in the nearby seabed and they have had tsunami monitoring and warning systems in place for some 40 or more years – but all they can do is send out alerts once a tsunami has been created and detected. And then tsunamis travel so fast (up to 500 miles an hour, apparently) that for nearby coasts any warning is almost too late.

It is in the nature of Japan that they are one of the most naturally controlled of societies. They are not people to leave things to chance if they can have a process to ensure it works properly. And they are world leaders in earthquake-proof design. In consequence they are possibly the best prepared of nations for earthquakes: they have very strict building codes, everyone is taught the drills almost from birth, there are excellent communication channels and warning systems. That is fine as far as quakes go, and as we have seen on the TV footage the majority of buildings (at least the more modern buildings) remained intact following the quake.

What is infinitely harder is to defend against a tsunami. Tsunami can be so large and generate such power that protecting against them is almost beyond our engineering (and almost certainly financial) capabilities. As protection one would have to build enormously high (50 feet?), thick and strong sea defences along every inch of low-lying coast. Sure it could be done, but probably no country on earth could afford to do it, especially for such relatively rare events. Physically preparedness is hugely hard; preparing the people, as is done for earthquakes, is almost impossible.

What is clear is that in much of the affected coastal areas it is the tsunami which has caused the vast majority of the damage. Again the TV footage shows buildings remaining intact after the quake but being simply washed away like matchsticks by the tsunami. Avoiding even that would be a huge engineering problem, but one I suspect Japan may now try to address.

This brings me to thinking about the situation at the Fukushima nuclear facility. As a scientist what has impressed me here is that all the fail-safe systems in the nuclear plants have worked as designed. Notwithstanding there do appear to have been issues. Fukushima 1, which blew the lid off it’s “shed” on Saturday, was working as designed until the backup generators were swamped by the tsunami (again it is the tsunami which has caused the problems!) and even then backup batteries were available. Even the venting of steam (and thus small amounts of short half-life radio-isotopes) is a planned and controlled event. And the “shed” is designed to fall apart (outwards, as it did) in the event of an explosion, so that explosion (however spectacular) wasn’t a majorly significant event.

Let’s be clear that, from what we’re being told, there is no nuclear meltdown at these plants; the reactors were automatically closed down when the quake struck, just as designed – this itself ensures that there can be no meltdown. (If meltdown were going to happen it would almost certainly have done so by now with far more major consequences than we’ve seen.) However there could well be some damage to the casings of a small number of fuel rods (as I understand it, it is this which caused the explosive hydrogen to be created). The reactors, having been shut down, do still generate heat which needs to be removed but this reduces quite quickly over a matter of days and (notwithstanding the problem at Fukushima 3) the worst of the heating problems should now be past.

What is of concern is whether the Japanese authorities are being truly open and honest about the situation at the nuclear plants; like most nuclear authorities they do not have a track record of transparency.

What I suspect will also happen is that Japan (indeed all the nuclear industry) will question the advisability of putting nuclear plant in areas most open to tsunami – like maybe not on Japan’s east coast?!

Of course those in the anti-nuclear lobby will use this same information to draw totally the opposite conclusions. As scientists we need to remain clear about what is designed for and whether it worked. I shall be most interested to see the reports from independent international inspections.

Finally a comment about the planet we live on. Many things in these events have stunned me, not the least being the awesome power of the tsunami. But perhaps the most staggering of all I found on the Scientific American website where there are many good reports:

Italy’s National Institute of Geophysics and Volcanology said the earth’s axis shifted 25 cm as a result of the earthquake, and the US Geological Survey said the main island of Japan had shifted 2.4 metres.

That doesn’t sound a lot, but they are incredibly large effects for the planet!

Our thoughts and hopes are, of course, with all the people of Japan.

Images from 123RF

Quotes of the Week

Another weekly selection of esoterica …

Anyone who tells you that your body is anything other than the beautiful, glorious MIRACLE that it is is, as they say in “Princess Bride”, probably selling something.
[Emily Nagoski at ]

[E]ach of us has the job of finding the beliefs we’re not interested in carrying with us any more, uprooting them, and finding something new and healthier to take their place. This process is neither easy nor painless. But it is a path to the confidence and joy I advocate everyone bring to bed with them every night.
[Emily Nagoski at ]

Men always fall into the absurdity of endeavouring to develop the mind, to push it violently forward in this direction or in that. The mind should be receptive, a harp waiting to catch the winds, a pool ready to be ruffled, not a bustling busybody, for ever trotting about on the pavement looking for a new bun shop.
[Robert Hichens, The Green Carnation, 1894]

Sex ought to be a wholly satisfying link between two affectionate people from which they emerge unanxious, rewarded, and ready for more.
[Alex Comfort]

The debate [in 1907 American Medicine about the weight of the soul] went on from the May issue all the way through December, whereupon I lost the thread, my eye having strayed across the page to “A Few Points in the Ancient History of Medicine and Surgery,” by Harry H Grigg, MD. It is with thanks to Harry H Grigg that I can now hold forth at cocktail parties on the history of haemorrhoids, gonorrhoea, circumcision, and the speculum.
[Mary Roach; Stiff, The Curious Lives of Human Cadavers]

Sex is one of the nine reasons for reincarnation. The other eight are unimportant.
[Henry Miller]

A promiscuous person is someone who is getting more sex than you are.
[Victor Lownes]

We do not remember. A certain group of our little people do this for us. They live in that part of the brain which has become known as the ‘fold of Broca’ … There may be twelve or fifteen shifts that change about and are on duty at different times like men in a factory … Therefore it seems likely that remembering a thing is all a matter of getting in touch with the shift that was on duty when the recording was done.
[Thomas Edison; Diaries]